SpatialCPie is an R package designed to facilitate cluster evaluation for spatial transcriptomics data by providing intuitive visualizations that display the relationship between clusters in order to guide the user during cluster identification, selection and further downstream applications.
devtools, execute the following from the R console:
devtools::install_github( "jbergenstrahle/SpatialCPie" ,build_opts=c("--no-resave-data", "--no-manual") )
SpatialCPie is currently on the developmental version of Bioconductor (3.9): https://bioconductor.org/packages/devel/bioc/html/SpatialCPie.html
See the vignette:
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.