Files in SpatialDecon

Deconvolution of mixed cells from spatial and/or bulk gene expression data

README.md

NEWS

NAMESPACE

DESCRIPTION

LICENSE

build/vignette.rds

data/mini_geomx_dataset.RData

data/safeTME.matches.RData

data/cellcols.RData

data/safeTME.RData

data/mean.resid.sd.RData

R/florets.R R/runErrorModel.R R/deriveWeights.R R/convertCellScoresToCounts.R R/TIL_barplot.R R/convertCellTypes.R R/derive_GeoMx_background.R R/download_profile_matrix.R R/flagOutliers.R R/deconLNR.R R/spatialdecon.R R/reverseDecon.R R/collapseCellTypes.R R/data.R R/package.R R/algorithm2.R R/mergeTumorIntoX.R vignettes/SpatialDecon_vignette.Rmd man/convertCellScoresToCounts.Rd man/tidy_X_and_Y.Rd man/mean.resid.sd.Rd man/TIL_barplot.Rd man/mini_geomx_dataset.Rd man/deconLNR.Rd man/SpatialDecon-package.Rd man/runErrorModel.Rd man/convertCellTypes.Rd man/florets.Rd man/safeTME.Rd man/collapseCellTypes.Rd man/spatialdecon.Rd man/download_profile_matrix.Rd man/safeTME.matches.Rd man/deriveWeights.Rd man/cellcols.Rd man/algorithm2.Rd man/flagOutliers.Rd man/reverseDecon.Rd man/mergeTumorIntoX.Rd man/derive_GeoMx_background.Rd tests/testthat.R

tests/testthat/testdata.RData

tests/testthat/expectedtestresults.RData

tests/testthat/test-integration-testing.R

inst/doc/SpatialDecon_vignette.html

inst/doc/SpatialDecon_vignette.R inst/doc/SpatialDecon_vignette.Rmd

SpatialDecon documentation built on Nov. 8, 2020, 6 p.m.