download_profile_matrix: Download a cell profile matrix

In SpatialDecon: Deconvolution of mixed cells from spatial and/or bulk gene expression data

Description

Download a cell profile matrix from the online library

Usage

download_profile_matrix(matrixname)

Arguments

matrixname

A name

Details

Valid values for the matrixname argument include:

• Airway_Epithelium

• Atlas_Adult_Retina_10x

• Census_Adult_Immune_10x

• Census_Newborn_Blood_10x

• Diff_Fetal_Neuron_SS2

• FetalMaternal_Adult_Blood_10x

• FetalMaternal_Adult_Blood_SS2

• FetalMaternal_Adult_Decidua_10x

• FetalMaternal_Adult_Decidua_SS2

• FetalMaternal_Fetal_Placenta_10x

• Human_brain

• Human_Cell_Landscape

• IBD_Adult_Colon_10x

• Landscape_Adult_Liver_10x

• Lung_plus_neutrophils

• Mouse_Brain

• Profiling_Adult_BoneMarrow_10x

• Reprogram_Embryo_Dendritic_10x

• Sensitivity_Adult_Esophagus_10x

• Sensitivity_Adult_Lung_10x

• Sensitivity_Adult_Spleen_10x

• Somatic_Adult_Pancreas_SS2

• SpatioTemporal_Adult_Kidney_10x

• SpatioTemporal_Fetal_Kidney_10x

• Tcell_Adult_Blood_10x

• Tcell_Adult_BoneMarrow_10x

• Tcell_Adult_Lung_10x

• Tcell_Adult_LymphNode_10x

Value

A cell profile matrix

Examples

X <- download_profile_matrix(matrixname = "Human_brain")
head(X)

SpatialDecon documentation built on Nov. 8, 2020, 6 p.m.