Man pages for SplicingGraphs
Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them
| assignReads | Assign reads to the edges of a SplicingGraphs object |
| bubbles-methods | Compute the bubbles of a splicing graph |
| countReads-methods | Summarize the reads assigned to a SplicingGraphs object |
| plotTranscripts-methods | Plot a set of transcripts along genomic coordinates. |
| rsgedgesByGene-methods | Extract the reduced edges and their ranges from a... |
| sgedgesByGene-methods | Extract the edges and their ranges from a SplicingGraphs... |
| sgedges-methods | Extract the edges (and nodes) of a splicing graph |
| sgraph-methods | Extract a splicing graph as a plottable graph-like object |
| SplicingGraphs-class | SplicingGraphs objects |
| SplicingGraphs-package | Create, manipulate, visualize splicing graphs, and assign... |
| toy_data | Little helpers for quick access to the toy data included in... |
| TSPCsg | TSPC splicing graphs |
| txpath-methods | Extract the transcript paths of a splicing graph |
