TADCompare: TADCompare: Identification and characterization of differential TADs

TADCompare is an R package designed to identify and characterize differential Topologically Associated Domains (TADs) between multiple Hi-C contact matrices. It contains functions for finding differential TADs between two datasets, finding differential TADs over time and identifying consensus TADs across multiple matrices. It takes all of the main types of HiC input and returns simple, comprehensive, easy to analyze results.

README.md Gene Ontology Enrichment Analysis Input data formats TAD comparison between two conditions

Vignettes Man pages API and functions Files

Package details
Author	Kellen Cresswell <cresswellkg@vcu.edu>, Mikhail Dozmorov <mikhail.dozmorov@vcuhealth.org>
Bioconductor views	Clustering FeatureExtraction HiC Sequencing Software
Maintainer	Kellen Cresswell <cresswellkg@vcu.edu>
License	MIT + file LICENSE
Version	1.0.0
Package repository	View on Bioconductor
Installation	Install the latest version of this package by entering the following in R: `if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("TADCompare")`