Files in TCC

TCC: Differential expression analysis for tag count data with robust normalization strategies

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

data/hypoData.RData

data/nakai.RData

data/hypoData_mg.RData

data/hypoData_ts.RData

data/arab.RData

R/TCC.estimateDE.limmavoom.R R/TCC.simulation.R R/TCC.calcNormFactors.R R/TCC_0.4.R R/TCC.getNormalizedData.R R/WAD.R R/TCC.estimateDE.DESeq2.R R/YAYOI.R R/ROKU.R R/TCC.R R/TCC.generic.R R/TCC.plotMA.R R/TCC.estimateDE.WAD.R R/TCC.public.R R/TCC.estimateDE.edgeR.R R/clusterSample.R R/TCC.estimateDE.SAMseq.R R/TCC.estimateDE.R R/TCC.estimateDE.YAYOI.R R/TCC.estimateDE.DESeq.R R/TCC.estimateDE.baySeq.R

vignettes/TCC.Rnw

man/arab.Rd man/plotFCPseudocolor.Rd man/filterLowCountGenes.Rd man/simulateReadCounts.Rd man/hypoData.Rd man/hypoData_ts.Rd man/plot.TCC.Rd man/getNormalizedData.Rd man/TCC.Rd man/getResult.Rd man/calcNormFactors.Rd man/hypoData_mg.Rd man/WAD.Rd man/makeFCMatrix.Rd man/nakai.Rd man/clusterSample.Rd man/ROKU.Rd man/estimateDE.Rd man/TCC-class.Rd man/calcAUCValue.Rd tests/runTests.R

inst/CITATION

inst/doc/TCC.pdf inst/doc/TCC.R

inst/doc/TCC.Rnw

inst/unitTests/test_calcNormFactors.R inst/unitTests/test_getResult.R inst/unitTests/test_WAD.R inst/unitTests/test_clusterSample.R inst/unitTests/test_ROKU.R inst/unitTests/test_estimateDE.R inst/unitTests/test_plotFCPseudocolor.R inst/unitTests/test_plot.R inst/unitTests/test_new.R

TCC documentation built on Nov. 8, 2020, 8:20 p.m.