Man pages for TCC
TCC: Differential expression analysis for tag count data with robust normalization strategies

arabArabidopsis RNA-Seq data set
calcAUCValueCalculate AUC value from a TCC-class object
calcNormFactorsCalculate normalization factors
clusterSamplePerform hierarchical clustering for samples from expression...
estimateDEEstimate degrees of differential expression (DE) for...
filterLowCountGenesFilter genes from a TCC-class object
getNormalizedDataObtain normalized count data
getResultObtain the summaries of results after the differential...
hypoDataA simulation dataset for comparing two-group tag count data,...
hypoData_mgA simulation dataset for comparing three-group tag count...
hypoData_tsA sample microarray data for detecting tissue-specific...
makeFCMatrixGenerate the fold change matrix for simulating count data
nakaiDNA microarray data set
plotFCPseudocolorCreate a pseudo-color image of simulation data
plot.TCCPlot a log fold-change versus log average expression...
ROKUdetect tissue-specific (or tissue-selective) patterns from...
simulateReadCountsGenerate simulation data from negative binomial (NB)...
TCCA package for differential expression analysis from tag count...
TCC-classA container for storing information used in TCC
WADCalculate WAD statistic for individual genes
TCC documentation built on May 31, 2017, 11:21 a.m.