Man pages for TCC
TCC: Differential expression analysis for tag count data with robust normalization strategies
| arab | Arabidopsis RNA-Seq data set |
| calcAUCValue | Calculate AUC value from a TCC-class object |
| calcNormFactors | Calculate normalization factors |
| clusterSample | Perform hierarchical clustering for samples from expression... |
| estimateDE | Estimate degrees of differential expression (DE) for... |
| filterLowCountGenes | Filter genes from a TCC-class object |
| getNormalizedData | Obtain normalized count data |
| getResult | Obtain the summaries of results after the differential... |
| hypoData | A simulation dataset for comparing two-group tag count data,... |
| hypoData_mg | A simulation dataset for comparing three-group tag count... |
| hypoData_ts | A sample microarray data for detecting tissue-specific... |
| makeFCMatrix | Generate the fold change matrix for simulating count data |
| nakai | DNA microarray data set |
| plotFCPseudocolor | Create a pseudo-color image of simulation data |
| plot.TCC | Plot a log fold-change versus log average expression... |
| ROKU | detect tissue-specific (or tissue-selective) patterns from... |
| simulateReadCounts | Generate simulation data from negative binomial (NB)... |
| TCC | A package for differential expression analysis from tag count... |
| TCC-class | A container for storing information used in TCC |
| WAD | Calculate WAD statistic for individual genes |
