Files in TCGAutils

TCGA utility functions for data management

NEWS.md README.md

NAMESPACE

DESCRIPTION

R/curatedTCGAData-helpers.R R/TCGAprimaryTumors.R R/TCGAbarcode.R R/imputeAssay.R R/data.R R/generateMap.R R/builds.R R/simplifyColData.R R/oncoPrintTCGA.R R/findGRangesCols.R R/makeGRangesListFromExonFiles.R R/TCGAutils-pkg.R R/TCGAsampleSelect.R R/ID-translation.R R/TCGAbiospec.R R/getFileName.R R/makeGRangesListFromCopyNumber.R R/utils.R R/makeSummarizedExperimentFromGISTIC.R R/simplifyTCGA.R inst/doc/TCGAutils.R

inst/doc/TCGAutils.html

inst/doc/TCGAutils.Rmd inst/extdata/bt.exon_quant.R inst/extdata/blca_cnaseq.R

inst/extdata/blca_cnaseq.txt

inst/extdata/bt.exon_quantification.txt

build/vignette.rds

tests/testthat.R tests/testthat/test-builds.R tests/testthat/test-identifiers.R tests/testthat/test-ID-translation.R vignettes/TCGAutils.Rmd

data/clinicalNames.rda

data/diseaseCodes.rda

data/sampleTypes.rda

man/TCGAbiospec.Rd man/trimColData.Rd man/imputeAssay.Rd man/makeGRangesListFromCopyNumber.Rd man/clinicalNames.Rd man/diseaseCodes.Rd man/getFileName.Rd man/hidden-helpers.Rd man/mergeColData.Rd man/makeSummarizedExperimentFromGISTIC.Rd man/TCGAsampleSelect.Rd man/TCGAbarcode.Rd man/makeGRangesListFromExonFiles.Rd man/builds.Rd man/curatedTCGAData-helpers.Rd man/generateMap.Rd man/ID-translation.Rd man/sampleTypes.Rd man/oncoPrintTCGA.Rd man/simplifyTCGA.Rd man/TCGAprimaryTumors.Rd man/TCGAutils-package.Rd man/findGRangesCols.Rd

TCGAutils documentation built on April 17, 2021, 6:04 p.m.