The SitePairSet object is a container for storing two SiteSet objects. Usually it is used to hold the results returned by searchAln.
## Constructor SitePairSet(siteset1, siteset2)
Each SiteSet object is from one sequence in the pairwise alignment.
signature(x = "SitePairSet"): Gets the first SiteSet object.
signature(x = "SitePairSet"): Gets the second SiteSet object.
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