API for TFEA.ChIP
Analyze Transcription Factor Enrichment
| Global functions | |
|---|---|
| .onAttach | Source code |
| ARNT.metadata | Man page |
| ARNT.peaks.bed | Man page |
| CM_list | Man page |
| DnaseHS_db | Man page |
| Entrez.gene.IDs | Man page |
| GR2tfbs_db | Man page Source code |
| GSEA.result | Man page |
| GSEA_ESpermutations | Man page Source code |
| GSEA_EnrichmentScore | Man page Source code |
| GSEA_run | Man page Source code |
| GeneID2entrez | Man page Source code |
| Genes.Upreg | Man page |
| Mat01 | Man page |
| MetaData | Man page |
| Select_genes | Man page Source code |
| contingency_matrix | Man page Source code |
| getCMstats | Man page Source code |
| get_LFC_bar | Man page Source code |
| get_chip_index | Man page Source code |
| gr.list | Man page |
| highlight_TF | Man page Source code |
| hypoxia | Man page |
| hypoxia_DESeq | Man page |
| log2.FC | Man page |
| makeTFBSmatrix | Man page Source code |
| plot_CM | Man page Source code |
| plot_ES | Man page Source code |
| plot_RES | Man page Source code |
| preprocessInputData | Man page Source code |
| rankTFs | Man page Source code |
| set_user_data | Man page Source code |
| stat_mat | Man page |
| tfbs.database | Man page |
| txt2GR | Man page Source code |
