makeTFBSmatrix: Function to search for a list of entrez gene IDs.

In TFEA.ChIP: Analyze Transcription Factor Enrichment

Description

Function to search for a list of entrez gene IDs in a TF-gene binding data base.

Usage

makeTFBSmatrix(GeneList, id_db, geneSetAsInput = TRUE)

Arguments

GeneList	Array of gene Entrez IDs
id_db	TF - gene binding database.
geneSetAsInput	TRUE for lists of GeneSet objects, FALSE for lists of vectors.

Value

1/0 matrix. Each row represents a gene, each column, a ChIP-Seq file.

Examples

data('tfbs.database','Entrez.gene.IDs',package = 'TFEA.ChIP')
makeTFBSmatrix(Entrez.gene.IDs,tfbs.database)

TFEA.ChIP documentation built on Nov. 8, 2020, 5:05 p.m.