stat_mat: Data frame, output from the function getCMstats from the...

In TFEA.ChIP: Analyze Transcription Factor Enrichment

Description

Used to run examples. Output of the function getCMstats from the TFEA.ChIP package, is a data frame storing the following fields:

• Accession: GEO or Encode accession ID for each ChIP-Seq dataset.

• Cell: cell type on which the ChIP-Seq experiment was performed

• Treatment: treatment used on the cells

• TF: Transcription Factor tested.

• p.value: raw p-value of the Fisher test performed on a contingency matrix for each ChIP-Seq experiment.

• OR: Odds Ratio on the contingency matrix done for each ChIP-Seq experiment.

• log2.OR

• adj.p.value: p-value adjusted by FDR

• log10.adj.pVal

• distance: euclidean distance from (log10.adj.pval, log2.OR) to the coordinates origin.

Usage

data("stat_mat")

Format

a data frame of 10 rows and 6 variables

TFEA.ChIP documentation built on Nov. 8, 2020, 5:05 p.m.