Ishikawa: Contains genomic regions of transcription factors at the...

In TFHAZ: Transcription Factor High Accumulation Zones

Description

Ishikawa is a Large GRanges object with 283,009 ranges and 1 metadata column. Each range represents the coordinates of a TF binding region while metadata column indicates the name of the TF.

Usage

data("Ishikawa")

Format

An object of class "GRanges"

Details

The dataset is obtained from computation of ENCODE ChIP-Seq data of the localization of transcription factor binding sites of the Ishikawa cell line. The data have been processed and extracted with GMQL (GenoMetric Query Language http://www.bioinformatics.deib.polimi.it/ GMQL/).

Value

None, the function is invoked for its side effect.

Examples

# loading dataset
data("Ishikawa")
head(Ishikawa)

TFHAZ documentation built on Nov. 8, 2020, 5:05 p.m.