TSCAN: TSCAN: Tools for Single-Cell ANalysis

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TSCAN enables users to easily construct and tune pseudotemporal cell ordering as well as analyzing differentially expressed genes. TSCAN comes with a user-friendly GUI written in shiny. More features will come in the future.

Author
Zhicheng Ji, Hongkai Ji
Date of publication
None
Maintainer
Zhicheng Ji <zji4@jhu.edu>
License
GPL(>=2)
Version
1.12.0

View on Bioconductor

Man pages

difftest
difftest
exprmclust
exprmclust
lpsdata
Sinlge-cell RNA-seq data for BMDC cells before and after LPS...
orderscore
orderscore
plotmclust
plotmclust
preprocess
preprocess
singlegeneplot
singlegeneplot
TSCAN
TSCAN: Tools for Single-Cell ANalysis
TSCANorder
TSCANorder
TSCANui
TSCANui

Files in this package

TSCAN/DESCRIPTION
TSCAN/NAMESPACE
TSCAN/R
TSCAN/R/TSCAN.R
TSCAN/R/TSCANorder.R
TSCAN/R/TSCANui.R
TSCAN/R/difftest.R
TSCAN/R/exprmclust.R
TSCAN/R/lpsdata.R
TSCAN/R/orderscore.R
TSCAN/R/plotmclust.R
TSCAN/R/preprocess.R
TSCAN/R/singlegeneplot.R
TSCAN/README.md
TSCAN/build
TSCAN/build/vignette.rds
TSCAN/data
TSCAN/data/datalist
TSCAN/data/lpsdata.rda
TSCAN/inst
TSCAN/inst/doc
TSCAN/inst/doc/TSCAN.R
TSCAN/inst/doc/TSCAN.Rnw
TSCAN/inst/doc/TSCAN.pdf
TSCAN/inst/shiny
TSCAN/inst/shiny/server.R
TSCAN/inst/shiny/shinyapps
TSCAN/inst/shiny/shinyapps/zhiji
TSCAN/inst/shiny/shinyapps/zhiji/TSCAN.dcf
TSCAN/inst/shiny/ui.R
TSCAN/inst/shiny/www
TSCAN/inst/shiny/www/ajaxloaderq.gif
TSCAN/inst/shiny/www/busy.js
TSCAN/inst/shiny/www/style.css
TSCAN/man
TSCAN/man/TSCAN.Rd
TSCAN/man/TSCANorder.Rd
TSCAN/man/TSCANui.Rd
TSCAN/man/difftest.Rd
TSCAN/man/exprmclust.Rd
TSCAN/man/lpsdata.Rd
TSCAN/man/orderscore.Rd
TSCAN/man/plotmclust.Rd
TSCAN/man/preprocess.Rd
TSCAN/man/singlegeneplot.Rd
TSCAN/vignettes
TSCAN/vignettes/TSCAN.Rnw