TSCAN: TSCAN: Tools for Single-Cell ANalysis
Version 1.14.0

TSCAN enables users to easily construct and tune pseudotemporal cell ordering as well as analyzing differentially expressed genes. TSCAN comes with a user-friendly GUI written in shiny. More features will come in the future.

Browse man pages Browse package API and functions Browse package files

AuthorZhicheng Ji, Hongkai Ji
Bioconductor views GUI GeneExpression Visualization
Date of publicationNone
MaintainerZhicheng Ji <zji4@jhu.edu>
LicenseGPL(>=2)
Version1.14.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("TSCAN")

Man pages

difftest: difftest
exprmclust: exprmclust
lpsdata: Sinlge-cell RNA-seq data for BMDC cells before and after LPS...
orderscore: orderscore
plotmclust: plotmclust
preprocess: preprocess
singlegeneplot: singlegeneplot
TSCAN: TSCAN: Tools for Single-Cell ANalysis
TSCANorder: TSCANorder
TSCANui: TSCANui

Functions

TSCAN Man page
TSCAN-package Man page
TSCANorder Man page Source code
TSCANui Man page Source code
difftest Man page Source code
exprmclust Man page Source code
lpsdata Man page
orderscore Man page Source code
plotmclust Man page Source code
preprocess Man page Source code
singlegeneplot Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/TSCAN.R
R/TSCANorder.R
R/TSCANui.R
R/difftest.R
R/exprmclust.R
R/lpsdata.R
R/orderscore.R
R/plotmclust.R
R/preprocess.R
R/singlegeneplot.R
README.md
build
build/vignette.rds
data
data/datalist
data/lpsdata.rda
inst
inst/doc
inst/doc/TSCAN.R
inst/doc/TSCAN.Rnw
inst/doc/TSCAN.pdf
inst/shiny
inst/shiny/server.R
inst/shiny/shinyapps
inst/shiny/shinyapps/zhiji
inst/shiny/shinyapps/zhiji/TSCAN.dcf
inst/shiny/ui.R
inst/shiny/www
inst/shiny/www/ajaxloaderq.gif
inst/shiny/www/busy.js
inst/shiny/www/style.css
man
man/TSCAN.Rd
man/TSCANorder.Rd
man/TSCANui.Rd
man/difftest.Rd
man/exprmclust.Rd
man/lpsdata.Rd
man/orderscore.Rd
man/plotmclust.Rd
man/preprocess.Rd
man/singlegeneplot.Rd
vignettes
vignettes/TSCAN.Rnw
TSCAN documentation built on May 20, 2017, 9:37 p.m.