TSCAN: TSCAN: Tools for Single-Cell ANalysis

TSCAN enables users to easily construct and tune pseudotemporal cell ordering as well as analyzing differentially expressed genes. TSCAN comes with a user-friendly GUI written in shiny. More features will come in the future.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("TSCAN")
AuthorZhicheng Ji, Hongkai Ji
Bioconductor views GUI GeneExpression Visualization
Date of publicationNone
MaintainerZhicheng Ji <zji4@jhu.edu>
LicenseGPL(>=2)
Version1.12.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/TSCAN.R R/TSCANorder.R R/TSCANui.R R/difftest.R R/exprmclust.R R/lpsdata.R R/orderscore.R R/plotmclust.R R/preprocess.R R/singlegeneplot.R
README.md
build
build/vignette.rds
data
data/datalist
data/lpsdata.rda
inst
inst/doc
inst/doc/TSCAN.R
inst/doc/TSCAN.Rnw
inst/doc/TSCAN.pdf
inst/shiny
inst/shiny/server.R
inst/shiny/shinyapps
inst/shiny/shinyapps/zhiji
inst/shiny/shinyapps/zhiji/TSCAN.dcf
inst/shiny/ui.R
inst/shiny/www
inst/shiny/www/ajaxloaderq.gif
inst/shiny/www/busy.js
inst/shiny/www/style.css
man
man/TSCAN.Rd man/TSCANorder.Rd man/TSCANui.Rd man/difftest.Rd man/exprmclust.Rd man/lpsdata.Rd man/orderscore.Rd man/plotmclust.Rd man/preprocess.Rd man/singlegeneplot.Rd
vignettes
vignettes/TSCAN.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.