singlegeneplot: singlegeneplot

In TSCAN: Tools for Single-Cell Analysis

Description

plot expression values of individual genes against pseudotime axis

Usage

singlegeneplot(geneexpr, TSCANorder, cell_size = 2)

Arguments

geneexpr	The gene expression values. Names should agree with the pseudotime information.
TSCANorder	The output of function TSCANorder.
cell_size	Size of cells in the plot.

Details

This function plots the expression values of individual genes against given pseudotime

Value

ggplot2 object.

Author(s)

Zhicheng Ji, Hongkai Ji <[e-mail]>

Examples

data(lpsdata)
procdata <- preprocess(lpsdata)
lpsmclust <- exprmclust(procdata)
lpsorder <- TSCANorder(lpsmclust,orderonly=FALSE,flip=TRUE)
#Choose STAT1 gene expression to plot
STAT2expr <- log2(lpsdata["STAT2",]+1)
singlegeneplot(STAT2expr, lpsorder)

Example output

TSCAN documentation built on Nov. 8, 2020, 5:13 p.m.