Man pages for TargetSearch
A package for the analysis of GC-MS metabolite profiling data

baselineBaseline correction algorithm
defunctDefunct functions in package 'TargetSearch'
FAMEoutliersFAME outlier detection
fileConvert RI files from text to binary format and viceversa.
FindAllPeaksExtract peaks from chromatogram files - low level function
FindPeaksExtract peaks from chromatogram files
fixRIFixing Retention Time Index Correction
ImportFameSettingsRetention time markers settings
ImportLibraryLibrary import
ImportSamplesSample definitions
medianRILibMedian RI library correction
NetCDFPeakFindingPeak picking algorithm from CDF files
peakCDFextractionNetCDF to R
peakFindIntensities and RI matrices
plotFAMEPlot a standard marker
plotPeakPlot peaks
plotPeakRIPlot peak RI across samples
plotPeakSimplePlot peaks - simple interface
plotRIdevPlot Retention Time Index Deviation
plotSpectraPlot a Spectra Comparison
ProfileAverage the correlating masses for each metabolite
ProfileCleanUpReduce redundancy of the profile
quantMatrixCreate an intensity matrix using quantification masses
ri2rtRetention Time Index to Retention Time convertion
RIcorrectPeak picking from CDF files and RI correction
riMatrixRetention Time Index Matrix
rt2riRetention Time to Retention Time Index convertion
sampleRISample especific RI detection
TargetSearchGUIA GUI for TargetSearch
TargetSearch-packageA targeted approach for GC-MS data.
TSExampleExample GC-MS data for TargetSearch Package
tsLib-classClass for representing a reference library
tsMSdata-classClass for representing MS data
tsProfile-classClass for representing a MS profile
tsRim-classClass for representing retention index markers
tsSample-classClass for representing samples
writeLibTextSave a library object in text format
writeMSPSave spectra in MSP format to be visualized in NIST
Write.ResultsSave TargetSearch result objects into files
TargetSearch documentation built on May 5, 2018, 6:02 p.m.