R/classes.R

In TargetSearch: A package for the analysis of GC-MS metabolite profiling data

#

setClass("tsLib", representation(
	Name    = "character",
	RI      = "numeric",
	medRI   = "numeric",
	RIdev   = "matrix",
	selMass = "list",
	topMass = "list",
	quantMass = "numeric",
	libData = "data.frame",
	spectra = "list"
))

setClass("tsRim", representation(
	limits   = "matrix",
	standard = "numeric",
	mass     = "numeric")
)

setClass("tsSample", representation(
	Names    = "character",
	CDFfiles = "character",
	RIfiles  = "character",
	CDFpath  = "character",
	RIpath   = "character",
	days     = "character",
	data     = "data.frame")
)

setClass("tsMSdata", representation(
	RI        = "list",
	RT        = "list",
	Intensity = "list"
))

setClass("tsProfile", representation(
	"tsMSdata",
	info    = "data.frame",
	profInt = "matrix",
	profRI  = "matrix",
	profRT  = "matrix"
))