Description Usage Arguments Value Examples
Seqinfo of TnTTrack and TnTBoard
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 | ## S4 replacement method for signature 'RangeBasedTrack'
seqinfo(x, new2old = NULL, pruning.mode = c("error", "coarse", "fine", "tidy")) <- value
## S4 method for signature 'RangeBasedTrack'
seqinfo(x)
## S4 method for signature 'RangeBasedTrack'
seqlevelsInUse(x)
## S4 method for signature 'TnTBoard'
seqinfo(x)
## S4 method for signature 'CompositeTrack'
seqinfo(x)
## S4 replacement method for signature 'CompositeTrack'
seqinfo(x, new2old = NULL, pruning.mode = c("error", "coarse", "fine", "tidy")) <- value
## S4 method for signature 'CompositeTrack'
seqlevelsInUse(x)
|
x |
A TnTTrack or TnTBoard object. |
new2old, pruning.mode, value |
Passed to seqinfo method for GenomicRanges. |
seqinfo
returns a SeqInfo object.
1 2 3 4 5 6 7 8 9 | btrack1 <- BlockTrack(GRanges("chr1", IRanges(1, 123)))
btrack2 <- BlockTrack(GRanges("chr2", IRanges(3, 599)))
ctrack <- merge(btrack1, btrack2)
board <- TnTBoard(list(btrack1, btrack2))
seqinfo(btrack1)
seqinfo(btrack2)
seqinfo(ctrack)
seqinfo(board)
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