seqinfo: Seqinfo of TnTTrack and TnTBoard

Description Usage Arguments Value Examples

Description

Seqinfo of TnTTrack and TnTBoard

Usage

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## S4 replacement method for signature 'RangeBasedTrack'
seqinfo(x, new2old = NULL, pruning.mode = c("error", "coarse", "fine", "tidy")) <- value

## S4 method for signature 'RangeBasedTrack'
seqinfo(x)

## S4 method for signature 'RangeBasedTrack'
seqlevelsInUse(x)

## S4 method for signature 'TnTBoard'
seqinfo(x)

## S4 method for signature 'CompositeTrack'
seqinfo(x)

## S4 replacement method for signature 'CompositeTrack'
seqinfo(x, new2old = NULL, pruning.mode = c("error", "coarse", "fine", "tidy")) <- value

## S4 method for signature 'CompositeTrack'
seqlevelsInUse(x)

Arguments

x

A TnTTrack or TnTBoard object.

new2old, pruning.mode, value

Passed to seqinfo method for GenomicRanges.

Value

seqinfo returns a SeqInfo object.

Examples

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btrack1 <- BlockTrack(GRanges("chr1", IRanges(1, 123)))
btrack2 <- BlockTrack(GRanges("chr2", IRanges(3, 599)))
ctrack <- merge(btrack1, btrack2)
board <- TnTBoard(list(btrack1, btrack2))

seqinfo(btrack1)
seqinfo(btrack2)
seqinfo(ctrack)
seqinfo(board)

TnT documentation built on Feb. 1, 2020, 2:01 a.m.