TreeAndLeaf package comes as an alternative to solve problems regarding dendrogram plotting, such as the lack of space when the dendrogram is too large and the need for adding more layers of information. It treats a whole dendrogram as a tree, in which the observations are represented by the leaves.
|Depends:||R (>= 4.0)|
|Imports:||RedeR, igraph, ape|
|Suggests:||knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, stringr, RColorBrewer|
|formatTree:||a function for formatting an igraph to be shown in RedeR.|
|hclust2igraph:||a function for converting a hclust object to an igraph.|
|phylo2igraph:||a function for converting a phylo object to an igraph.|
|treeAndLeaf:||a function for layout creation and plotting of the TreeAndLeaf in RedeR.|
Further information is available in the vignettes by typing
vignette("TreeAndLeaf"). Documented topics are also available in
HTML by typing
selecting the TreeAndLeaf package from the menu.
Leonardo W. Kume, Luis E. A. Rizzardi, Milena A. Cardoso, Mauro A. A. Castro
CASTRO, M. A. et al. RedeR: R/Bioconductor package for representing modular structures, nested networks and multiple levels of hierarchical associations. Genome Biology, v. 13, n. 4, p. R29, 2012.
CASTRO, M. A. A. et al. Regulators of genetic risk of breast cancer identified by integrative network analysis. Nature Genetics, v. 48, n. 1, p. 12<e2><80><93>21, jan. 2016.
RUSU, A.; SANTIAGO, C. Grid Drawings of Binary Trees: An Experimental Study. Journal of Graph Algorithms and Applications, v. 12, n. 2, p. 131<e2><80><93>195, 2008.
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