UNDO: Unsupervised Deconvolution of Tumor-Stromal Mixed Expressions

UNDO is an R package for unsupervised deconvolution of tumor and stromal mixed expression data. It detects marker genes and deconvolutes the mixing expression data without any prior knowledge.

AuthorNiya Wang <wangny@vt.edu>
Date of publicationNone
MaintainerNiya Wang <wangny@vt.edu>
LicenseGPL-2
Version1.16.0

View on Bioconductor

Files

UNDO/DESCRIPTION
UNDO/NAMESPACE
UNDO/NEWS
UNDO/R
UNDO/R/UNDO-internal.R UNDO/R/calc_E1.R UNDO/R/dimension_reduction.R UNDO/R/gene_expression_input.R UNDO/R/marker_gene_selection.R UNDO/R/mixing_matrix_computation.R UNDO/R/two_source_deconv.R
UNDO/build
UNDO/build/vignette.rds
UNDO/data
UNDO/data/BiologicalMixMCF7HS27.rda
UNDO/data/NumericalMixMCF7HS27.rda
UNDO/data/NumericalMixingMatrix.rda
UNDO/data/PureMCF7HS27.rda
UNDO/inst
UNDO/inst/doc
UNDO/inst/doc/UNDO-vignette.R
UNDO/inst/doc/UNDO-vignette.Rnw
UNDO/inst/doc/UNDO-vignette.pdf
UNDO/man
UNDO/man/BiologicalMixMCF7HS27.Rd UNDO/man/NumericalMixMCF7HS27.Rd UNDO/man/NumericalMixingMatrix.Rd UNDO/man/PureMCF7HS27.Rd UNDO/man/UNDO-package.Rd UNDO/man/calc_E1.Rd UNDO/man/dimension_reduction.Rd UNDO/man/gene_expression_input.Rd UNDO/man/marker_gene_selection.Rd UNDO/man/mixing_matrix_computation.Rd UNDO/man/two_source_deconv.Rd
UNDO/vignettes
UNDO/vignettes/UNDO-vignette.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.