UNDO-package: Implementation of UNDO (unsupervised deconvolution of...
In UNDO: Unsupervised Deconvolution of Tumor-Stromal Mixed Expressions

Description Details Author(s) Examples

This package contains main function "two_source_deconv" to implement the deconvolution of mixed tumor-stromal expressions in a completely unsupervised way. The prior knowledge of mixing matrix or pure expression is not needed. The package detects marker genes and calculate the mixing matrix and pure expressions automatically.

Package:	UNDO
Type:	Package
Version:	1.7.3
Date:	2014-04-30
License:	GPL version 2 or later

two_source_deconv(ExpressionData,lowper=0.4,highper=0.1,epsilon1=0.01,epsilon2=0.01,A=NULL,S1=NULL,S2=NULL,return=0)

Niya Wang <wangny@vt.edu>

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data(NumericalMixMCF7HS27)
X <- NumericalMixMCF7HS27
deconvResult <- two_source_deconv(X, lowper = 0.4, highper = 0.1, epsilon1 = 0.1, epsilon2 = 0.1, A = NULL, S1=NULL, S2=NULL, return = 0)