shiftATACGranges: A function to shift GRanges fragments by 5/-4. This is useful...
In VplotR: Set of tools to make V-plots and compute footprint profiles
Description
Usage
Arguments
Value
Examples
Description
A function to shift GRanges fragments by 5/-4. This is useful
when dealing with fragments coming from ATAC-seq.
Usage
1
shiftATACGranges(g, pos_shift = 4, neg_shift = 5)
Arguments
g
GRanges of ATAC-seq fragments
pos_shift
Integer. How many bases should fragments on
direct strand be shifted by?
neg_shift
Integer. How many bases should fragments on
negative strand be shifted by?
Value
A GRanges object containing fragments from the input
.bam file.
Examples
1
2
VplotR documentation built on Nov. 8, 2020, 7:50 p.m.
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Description Usage Arguments Value Examples
Description
A function to shift GRanges fragments by 5/-4. This is useful when dealing with fragments coming from ATAC-seq.
Usage
1 | shiftATACGranges(g, pos_shift = 4, neg_shift = 5)
|
Arguments
g |
GRanges of ATAC-seq fragments |
pos_shift |
Integer. How many bases should fragments on direct strand be shifted by? |
neg_shift |
Integer. How many bases should fragments on negative strand be shifted by? |
Value
A GRanges object containing fragments from the input .bam file.
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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