shuffleVmat: A function to shuffle a Vmat
In VplotR: Set of tools to make V-plots and compute footprint profiles
Description
Usage
Arguments
Value
Examples
Description
This function works on a Vmat (the output of computeVmat()). It shuffles
the matrix to randomize the fragment densities.
Usage
1
shuffleVmat(Vmat)
Arguments
Vmat
A Vmat, usually output of computeVmat
Value
A shuffled Vmat object
Examples
1
2
3
4
data(bam_test)
data(ce11_all_REs)
Vmat <- computeVmat(bam_test, ce11_all_REs)
Vmat <- shuffleVmat(Vmat)
VplotR documentation built on Nov. 8, 2020, 7:50 p.m.
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Description Usage Arguments Value Examples
Description
This function works on a Vmat (the output of computeVmat()). It shuffles the matrix to randomize the fragment densities.
Usage
1 | shuffleVmat(Vmat)
|
Arguments
Vmat |
A Vmat, usually output of computeVmat |
Value
A shuffled Vmat object
Examples
1 2 3 4 | data(bam_test)
data(ce11_all_REs)
Vmat <- computeVmat(bam_test, ce11_all_REs)
Vmat <- shuffleVmat(Vmat)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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