Description Usage Arguments Value
View source: R/nucleosome_enrichment.R
A function to compute nucleosome enrichment of a Vmat
1 2 3 4 5 6 7 8 9 10 | computeNucleosomeEnrichmentOverBackground(
Vmat,
background = NULL,
plus1_nuc_only = FALSE,
minus1_nuc = list(c(xmin = -150, xmax = -70), c(ymin = 165, ymax = 260)),
minus1_nuc_neg = list(c(xmin = -150, xmax = -70), c(ymin = 60, ymax = 145)),
plus1_nuc = list(c(xmin = 70, xmax = 150), c(ymin = 165, ymax = 260)),
plus1_nuc_neg = list(c(xmin = 70, xmax = 150), c(ymin = 50, ymax = 145)),
...
)
|
Vmat |
A Vmat computed by nucleosomeEnrichment function |
background |
a background Vmat |
plus1_nuc_only |
Boolean Should compute nucleosome enrichment only for +1 nucleosome? |
minus1_nuc |
list where the -1 nucleosome is located |
minus1_nuc_neg |
where the background of the -1 nucleosome is located |
plus1_nuc |
where the +1 nucleosome is located |
plus1_nuc_neg |
where the background of the +1 nucleosome is located |
... |
additional parameters |
list
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