API for affyPara
Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays
| Global functions | |
|---|---|
| .ReadHeaderSF | Source code |
| .calculateExprSetSF | Source code |
| .checkPartSize | Source code |
| .createSumMatrix | Source code |
| .doSummarizationPara | Source code |
| .getAffyBatchSF | Source code |
| .getArrayLoessSF | Source code |
| .getArraySF | Source code |
| .getColSF | Source code |
| .getCompIntensityMatrixSF | Source code |
| .getCompIntensitySF | Source code |
| .getFUNAffyBatchSF | Source code |
| .getIntensitySF | Source code |
| .getObjectType | Source code |
| .getSumResults | Source code |
| .indexValueL | Source code |
| .initAffyBatchSF | Source code |
| .onAttach | Source code |
| .permArrays | Source code |
| .permMatrix | Source code |
| .removeNA | Source code |
| .resetABSF | Source code |
| .resetMatSF | Source code |
| .rowMeansPara | Source code |
| .rowMeansParaSF | Source code |
| .rowVPara | Source code |
| .rowVParaSF | Source code |
| .setArraySF | Source code |
| .setColSF | Source code |
| .setIntMatSF | Source code |
| .writeLinesSF | Source code |
| MAplotPara | Man page Source code |
| MAplotParaSFgMean | Source code |
| MAplotSer | Man page Source code |
| bgCorrectPara | Man page Source code |
| bgCorrectParaSF | Source code |
| boxplotPara | Man page Source code |
| boxplotParaCalAllDiff | Source code |
| boxplotParaCheckPercent | Source code |
| boxplotParaCheckPercentSamples | Source code |
| boxplotParaCheckTypDef | Source code |
| boxplotParaChecknSamples | Source code |
| boxplotParaComStatsM | Source code |
| boxplotParaDrawn | Source code |
| boxplotParaSFgParBox | Source code |
| boxplotParacheckCritSamp | Source code |
| boxplotParagCrSamp | Source code |
| boxplotParagLimits | Source code |
| boxplotParagMdMnDef | Source code |
| boxplotParagMedIQR | Source code |
| boxplotSplit | Source code |
| class:vsnInputPara | Man page |
| combineMatrices | Man page Source code |
| computeExprSetPara | Man page Source code |
| dim,vsnInputPara-method | Man page |
| distributeFiles | Man page Source code |
| drawHistDiff | Source code |
| drawMAplot | Source code |
| drawnBxp | Source code |
| generateMatrizenSF | Source code |
| getBadQCLoessSigma | Source code |
| getBoxplot | Source code |
| getDifferenceBox | Source code |
| getLevelsBQ | Source code |
| getMatrixBQBoxLevels | Source code |
| getMatrixBQLevels | Source code |
| getNumberPlots | Source code |
| getTotalBoxToDrawn | Source code |
| getValuesChips | Source code |
| grad_loglikPara | Source code |
| grad_loglikParaSF | Source code |
| hirarchicalDistSF | Source code |
| justvsnPara | Man page Source code |
| logikPara | Source code |
| logikParaSF1 | Source code |
| logikParaSF2 | Source code |
| makeCluster | Man page Source code |
| mergeAffyBatches | Man page |
| ncol,vsnInputPara-method | Man page |
| normalizeAffyBatchConstantPara | Man page Source code |
| normalizeAffyBatchInvariantsetPara | Man page Source code |
| normalizeAffyBatchLoessIterPara | Man page Source code |
| normalizeAffyBatchLoessPara | Man page Source code |
| normalizeAffyBatchQuantilesPara | Man page Source code |
| normalizeConstantPara | Source code |
| normalizeConstantParaSF1 | Source code |
| normalizeConstantParaSF2 | Source code |
| normalizeInvariantsetPara | Source code |
| normalizeInvariantsetParaSF1 | Source code |
| normalizeInvariantsetParaSF2 | Source code |
| normalizeLoessIterPara | Source code |
| normalizeLoessIterParaSFnodes | Source code |
| normalizeLoessPara | Source code |
| normalizeLoessParaSFbetNodes | Source code |
| normalizeLoessParaSFnodes | Source code |
| normalizeQuantilesPara | Man page Source code |
| normalizeQuantilesParaSF1 | Source code |
| normalizeQuantilesParaSF2 | Source code |
| nrow,vsnInputPara-method | Man page |
| preproPara | Man page Source code |
| read.affybatchPara | Man page Source code |
| reassignMatrizenSF | Source code |
| removeDistributedFiles | Man page Source code |
| rmaPara | Man page Source code |
| setupPara | Source code |
| setupParaSF | Source code |
| splitAffyBatch | Man page Source code |
| splitFileVector | Man page Source code |
| splitMatrix | Man page Source code |
| stopCluster | Man page Source code |
| summaryM1M2Para | Man page Source code |
| vsn2Para | Man page Source code |
| vsn2_optimPara | Source code |
| vsn2trsfPara | Source code |
| vsn2trsfParaSF | Source code |
| vsnColumnByColumnPara | Source code |
| vsnColumnByColumnParaSF | Source code |
| vsnInputPara | Man page |
| vsnInputPara-class | Man page |
| vsnLTSPara | Source code |
| vsnMLPara | Source code |
| vsnMatrixPara | Source code |
| vsnSamplePara | Source code |
| vsnStrataPara | Source code |
| vsnrmaPara | Man page Source code |
| writeArraySF | Source code |
| writeMeansArraySF | Source code |
