API for alpine
alpine
| Global functions | |
|---|---|
| addVLMMBias | Source code |
| alphafun | Source code |
| alpine-package | Man page |
| alpineFlag | Source code |
| buildFragtypes | Man page Source code |
| calcVLMMBias | Source code |
| ebt.fit | Man page |
| ebt.theta | Man page |
| endRight | Source code |
| estimateAbundance | Man page Source code |
| extractAlpine | Man page Source code |
| extractRes | Source code |
| fitBiasModels | Man page Source code |
| fitpar | Man page |
| fitpar.small | Man page |
| gaToReadsOnTx | Source code |
| genes.theta | Man page |
| genomeToTx | Source code |
| getFPBP | Source code |
| getFragmentWidths | Man page Source code |
| getKmerFreqs | Source code |
| getLogLambda | Source code |
| getPositionalKmerFreqs | Source code |
| getPositionalObsOverExp | Source code |
| getReadLength | Man page Source code |
| incidenceMat | Source code |
| mapTxToGenome | Source code |
| matchReadsToFraglist | Source code |
| matchToDensity | Source code |
| mergeGenes | Man page Source code |
| namesToModels | Source code |
| normalizeDESeq | Man page Source code |
| plotFragLen | Man page Source code |
| plotGC | Man page Source code |
| plotGRL | Man page Source code |
| plotOrder0 | Man page Source code |
| plotOrder1 | Man page Source code |
| plotOrder2 | Man page Source code |
| plotRelPos | Man page Source code |
| predictCoverage | Man page Source code |
| preprocessedData | Man page |
| readGAlignAlpine | Source code |
| res | Man page |
| runEM | Source code |
| splitGenesAcrossChroms | Man page Source code |
| splitLongGenes | Man page Source code |
| startLeft | Source code |
| subsetAndWeightFraglist | Source code |
| txToExon | Source code |
| txToGenome | Source code |
| txdf.theta | Man page |
