antiProfiles: Implementation of gene expression anti-profiles

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Implements gene expression anti-profiles as described in Corrada Bravo et al., BMC Bioinformatics 2012, 13:272 doi:10.1186/1471-2105-13-272.

Author
Hector Corrada Bravo, Rafael A. Irizarry and Jeffrey T. Leek
Date of publication
None
Maintainer
Hector Corrada Bravo <hcorrada@gmail.com>
License
Artistic-2.0
Version
1.14.0
URLs

View on Bioconductor

Man pages

antiprofile-class
A gene expression anti-profile
antiProfiles-package
Gene Expression Anti-profiles
antiprofilestats-class
Statistics used to build anti-profiles
apCount-methods
Obtain the anti-profile score for a set of samples
apReorder-methods
Reorder an AntiProfileStats object
apStats
Compute statistics used to construct antiProfile
buildAntiProfile-methods
Create an anti-profile from a AntiProfileStats object
ev
Compute expression variability measure
tissueSpecAntiprofile-class
A gene expression anti-profile using tissue-specific regions

Files in this package

antiProfiles/DESCRIPTION
antiProfiles/NAMESPACE
antiProfiles/R
antiProfiles/R/AllClasses.r
antiProfiles/R/AllGenerics.r
antiProfiles/R/accessors.r
antiProfiles/R/antiProfiles-package.r
antiProfiles/R/ap-methods.r
antiProfiles/R/apCounts-methods.r
antiProfiles/R/apReorder-methods.r
antiProfiles/R/apStats.r
antiProfiles/R/ev.R
antiProfiles/R/show-methods.r
antiProfiles/build
antiProfiles/build/vignette.rds
antiProfiles/inst
antiProfiles/inst/NEWS.Rd
antiProfiles/inst/doc
antiProfiles/inst/doc/antiProfiles.R
antiProfiles/inst/doc/antiProfiles.Rnw
antiProfiles/inst/doc/antiProfiles.pdf
antiProfiles/man
antiProfiles/man/antiProfiles-package.Rd
antiProfiles/man/antiprofile-class.Rd
antiProfiles/man/antiprofilestats-class.Rd
antiProfiles/man/apCount-methods.Rd
antiProfiles/man/apReorder-methods.Rd
antiProfiles/man/apStats.Rd
antiProfiles/man/buildAntiProfile-methods.Rd
antiProfiles/man/ev.Rd
antiProfiles/man/tissueSpecAntiprofile-class.Rd
antiProfiles/vignettes
antiProfiles/vignettes/antiProfiles.Rnw
antiProfiles/vignettes/antiProfiles.bib