antiProfiles: Implementation of gene expression anti-profiles
Version 1.16.0

Implements gene expression anti-profiles as described in Corrada Bravo et al., BMC Bioinformatics 2012, 13:272 doi:10.1186/1471-2105-13-272.

AuthorHector Corrada Bravo, Rafael A. Irizarry and Jeffrey T. Leek
Bioconductor views Classification GeneExpression
Date of publicationNone
MaintainerHector Corrada Bravo <hcorrada@gmail.com>
LicenseArtistic-2.0
Version1.16.0
URL https://github.com/HCBravoLab/antiProfiles
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("antiProfiles")

Getting started

Package overview

Popular man pages

antiprofile-class: A gene expression anti-profile
antiProfiles-package: Gene Expression Anti-profiles
apReorder-methods: Reorder an AntiProfileStats object
apStats: Compute statistics used to construct antiProfile
buildAntiProfile-methods: Create an anti-profile from a AntiProfileStats object
ev: Compute expression variability measure
tissueSpecAntiprofile-class: A gene expression anti-profile using tissue-specific regions
See all...

All man pages Function index File listing

Man pages

antiprofile-class: A gene expression anti-profile
antiProfiles-package: Gene Expression Anti-profiles
antiprofilestats-class: Statistics used to build anti-profiles
apCount-methods: Obtain the anti-profile score for a set of samples
apReorder-methods: Reorder an AntiProfileStats object
apStats: Compute statistics used to construct antiProfile
buildAntiProfile-methods: Create an anti-profile from a AntiProfileStats object
ev: Compute expression variability measure
tissueSpecAntiprofile-class: A gene expression anti-profile using tissue-specific regions

Functions

AntiProfile-class Man page
AntiProfileStats-class Man page
TissueSpecAntiProfile-class Man page
antiProfiles-package Man page
apCount Man page
apCount,AntiProfile,matrix-method Man page
apCount,TissueSpecAntiProfile,matrix-method Man page
apReorder Man page
apReorder,AntiProfileStats,numeric-method Man page
apStats Man page Source code
apTissueSpec Source code
buildAntiProfile Man page
buildAntiProfile,AntiProfileStats-method Man page
countTissSpec Source code
ev Man page Source code
getNormalRegions Man page
getNormalRegions,AntiProfile-method Man page
getNormalRegions,TissueSpecAntiProfile-method Man page
getNormalTissueRegions Man page
getNormalTissueRegions,TissueSpecAntiProfile-method Man page
getProbeStats Man page
getProbeStats,AntiProfileStats-method Man page
getProbesetIds Man page
getProbesetIds,AntiProfile-method Man page
getProbesetIds,TissueSpecAntiProfile-method Man page
printHead Source code
succify Source code
tissueSpecAP Source code

Files

DESCRIPTION
NAMESPACE
R
R/AllClasses.r
R/AllGenerics.r
R/accessors.r
R/antiProfiles-package.r
R/ap-methods.r
R/apCounts-methods.r
R/apReorder-methods.r
R/apStats.r
R/ev.R
R/show-methods.r
build
build/vignette.rds
inst
inst/NEWS.Rd
inst/doc
inst/doc/antiProfiles.R
inst/doc/antiProfiles.Rnw
inst/doc/antiProfiles.pdf
man
man/antiProfiles-package.Rd
man/antiprofile-class.Rd
man/antiprofilestats-class.Rd
man/apCount-methods.Rd
man/apReorder-methods.Rd
man/apStats.Rd
man/buildAntiProfile-methods.Rd
man/ev.Rd
man/tissueSpecAntiprofile-class.Rd
vignettes
vignettes/antiProfiles.Rnw
vignettes/antiProfiles.bib
antiProfiles documentation built on May 20, 2017, 10:20 p.m.

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