artms_data_ph_keys: Keys File Example
In artMS: Analytical R tools for Mass Spectrometry
Description
the artMS keys file provides the details of the experimental
design for any given proteomics experiment.
This particular example belongs to a PH experiment consisting of two
head and neck cancer cell lines ("Conditions" "Cal33" and "HSC6"),
with 2 biological replicates each (in this reduced version)
Usage
1
Format
Tab delimited file with the following columns:
- Raw.file
Raw file processed. Each one should be a unique
biological (or technical) replicate
- IsotopeLabelType
Type of labeling. L is used for label free
experiments
- Condition
Label for conditions. VERY IMPORTANT: Only alpha-numeric
characters and underscore (_) are allowed
- BioReplicate
Label for the Biological replicates. VERY IMPORTANT:
Use the same labeling for bioreplicate as the Condition, but adding a
dash (-) corresponding to the number of biological replicate.
For example, for Condition "Cal", use Cal-1, Cal-2, Cal-3, etc
for the bioreplicates
- Run
The MS run number
artMS documentation built on April 14, 2021, 6 p.m.
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Description
the artMS keys file provides the details of the experimental
design for any given proteomics experiment.
This particular example belongs to a PH experiment consisting of two
head and neck cancer cell lines ("Conditions" "Cal33" and "HSC6"),
with 2 biological replicates each (in this reduced version)
Usage
1 |
Format
Tab delimited file with the following columns:
- Raw.file
Raw file processed. Each one should be a unique biological (or technical) replicate
- IsotopeLabelType
Type of labeling.
Lis used for label free experiments- Condition
Label for conditions. VERY IMPORTANT: Only alpha-numeric characters and
underscore (_)are allowed- BioReplicate
Label for the Biological replicates. VERY IMPORTANT: Use the same labeling for bioreplicate as the Condition, but adding a
dash (-)corresponding to the number of biological replicate. For example, forCondition"Cal", useCal-1,Cal-2,Cal-3, etc for the bioreplicates- Run
The MS run number
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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