Files in artMS
Analytical R tools for Mass Spectrometry

_pkgdown.yml
NEWS
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/avg_intensity_RT.R R/evidenceToSaintExpressFormat.R R/annotations.R R/protein2SiteConversion.R R/main.R R/enrichments.R R/checkIfFile.R R/data.R R/qualityControlEvidenceBasic.R R/writeExtras.R R/qualityControlSummaryExtended.R R/qualityControlEvidenceExtended.R R/msstat_summary.R R/plots.R R/evidenceToSAINTqFormat.R R/runMSstats.R R/getMSstatsformat.R R/analysisQuantifications.R R/metabolomics.R R/MSstats_functions.R R/qualityControlMetabolomics.R R/otherApps.R inst/doc/artMS_vignette.Rmd inst/doc/artMS_vignette.R
inst/doc/artMS_vignette.html
inst/extdata/createData.R
inst/extdata/artms_config.yaml
inst/extdata/manuscriptCaseStudies.R
build/vignette.rds
tests/testthat.R tests/testthat/test-evidence.R vignettes/artMS_vignette.Rmd
data/artms_data_pathogen_LPN.RData
data/artms_data_pathogen_TB.RData
data/artms_data_corum_mito_database.RData
data/artms_data_ph_msstats_results.RData
data/artms_data_ph_evidence.RData
data/artms_data_ph_contrast.RData
data/artms_data_ph_keys.RData
data/artms_config.RData
data/artms_data_randomDF.RData
data/artms_data_ph_msstats_modelqc.RData
data/artms_data_ph_config.RData
man/artms_data_ph_config.Rd man/artmsConvertMetabolomics.Rd man/artmsMapUniprot2Entrez.Rd man/artmsSpectralCounts.Rd man/artmsQualityControlEvidenceExtended.Rd man/artms_data_ph_msstats_modelqc.Rd man/artmsQualityControlSummaryExtended.Rd man/artmsMsstatsSummary.Rd man/artmsEvidenceToSaintExpress.Rd man/artmsPhotonOutput.Rd man/artmsChangeColumnName.Rd man/artmsQualityControlEvidenceBasic.Rd man/artmsEnrichLog2fc.Rd man/artmsIsSpeciesSupported.Rd man/artmsLeaveOnlyUniprotEntryID.Rd man/artmsProtein2SiteConversion.Rd man/artms_data_ph_msstats_results.Rd man/artmsPlotHeatmapQuant.Rd man/artmsEvidenceToSAINTq.Rd man/artmsWriteConfigYamlFile.Rd man/artmsQuantification.Rd man/artmsIsEvidenceNewVersion.Rd man/artmsMergeEvidenceAndKeys.Rd man/artms_data_randomDF.Rd man/artmsSILACtoLong.Rd man/artms_config.Rd man/artmsResultsWide.Rd man/artmsGeneratePhSiteExtended.Rd man/artmsEnrichProfiler.Rd man/artms_data_ph_keys.Rd man/artmsAnnotateSpecie.Rd man/artmsAnnotationUniprot.Rd man/artmsAnalysisQuantifications.Rd man/artmsAvgIntensityRT.Rd man/artmsFilterEvidenceContaminants.Rd man/artms_data_pathogen_LPN.Rd man/artms_data_corum_mito_database.Rd man/artms_data_ph_contrast.Rd man/artms_data_ph_evidence.Rd man/artms_data_pathogen_TB.Rd man/artmsPhosfateOutput.Rd man/artmsDataPlots.Rd man/artmsVolcanoPlot.Rd man/artmsQualityControlMetabolomics.Rd
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docs/articles/artMS_vignette.html
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docs/articles/artMS_vignette_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/artMS_vignette_files/header-attrs-2.1/header-attrs.js
docs/reference/artmsEnrichLog2fc.html
docs/reference/artms_data_corum_mito_database.html
docs/reference/artmsResultsWide.html
docs/reference/artmsQualityControlEvidenceBasic.html
docs/reference/artmsPhosfateOutput.html
docs/reference/artmsConvertMetabolomics.html
docs/reference/artmsIsEvidenceNewVersion.html
docs/reference/artmsWriteConfigYamlFile.html
docs/reference/artmsGeneratePhSiteExtended.html
docs/reference/artmsAvgIntensityRT.html
docs/reference/artms_config.html
docs/reference/artmsQualityControlMetabolomics.html
docs/reference/artms_data_randomDF.html
docs/reference/artms_data_ph_keys.html
docs/reference/artmsPlotHeatmapQuant-1.png
docs/reference/artmsAnalysisQuantifications.html
docs/reference/artms_data_pathogen_LPN.html
docs/reference/artms_data_ph_msstats_results.html
docs/reference/artmsVolcanoPlot-1.png
docs/reference/artmsSpectralCounts.html
docs/reference/artmsQualityControlEvidenceExtended.html
docs/reference/artmsIsSpeciesSupported.html
docs/reference/artms_data_ph_evidence.html
docs/reference/Rplot001.png
docs/reference/artmsQualityControlSummaryExtended.html
docs/reference/artmsEvidenceToSaintExpress.html
docs/reference/artmsLeaveOnlyUniprotEntryID.html
docs/reference/artmsPlotHeatmapQuant.html
docs/reference/artmsAnnotationUniprot.html
docs/reference/artmsFilterEvidenceContaminants.html
docs/reference/artmsDataPlots.html
docs/reference/artmsPhotonOutput.html
docs/reference/artmsProtein2SiteConversion.html
docs/reference/artmsChangeColumnName.html
docs/reference/artmsQualityControlEvidenceBasic-1.png
docs/reference/artmsMergeEvidenceAndKeys.html
docs/reference/artmsQuantification.html
docs/reference/artmsMapUniprot2Entrez.html
docs/reference/artmsEnrichProfiler.html
docs/reference/artms_data_ph_msstats_modelqc.html
docs/reference/artmsAnnotateSpecie.html
docs/reference/artmsEvidenceToSAINTq.html
docs/reference/artmsQualityControlEvidenceBasic-2.png
docs/reference/Rplot002.png
docs/reference/artms_data_pathogen_TB.html
docs/reference/artmsMsstatsSummary.html
docs/reference/artmsVolcanoPlot.html
docs/reference/artms_data_ph_contrast.html
docs/reference/index.html
docs/reference/artmsSILACtoLong.html
docs/reference/artms_data_ph_config.html
artMS documentation built on April 14, 2021, 6 p.m.