API for baySeq
Empirical Bayesian analysis of patterns of differential expression in count data
| Global functions | |
|---|---|
| .betaBinomialFunction | Source code |
| .betaBinomialNCFunction | Source code |
| .bimodalKernel | Source code |
| .bimodalSep | Source code |
| .catObservables | Source code |
| .ciEstimator | Source code |
| .constructWeights | Source code |
| .controlFDR | Source code |
| .controlFWER | Source code |
| .dZINB | Source code |
| .fastUniques | Source code |
| .logRowSum | Source code |
| .logsum | Source code |
| .multiDirichletFunction | Source code |
| .multiDirichletFunction2 | Source code |
| .multiDirichletFunction3 | Source code |
| .multiSymDirichletFunction | Source code |
| .nbinomDens | Source code |
| .normDensityFunction | Source code |
| .oldmethObservables | Source code |
| .pasteMatrixColon | Source code |
| .posteriorWeights | Source code |
| .selectPosteriors | Source code |
| .selectTags | Source code |
| .showData | Source code |
| .sliceArray | Source code |
| CDPost | Man page |
| CDPriors | Man page |
| ZINBDensity | Man page |
| [,countData,ANY-method | Man page |
| [,countData-method | Man page |
| `getLikelihoods.BB` | Source code |
| `getLikelihoods.NB` | Source code |
| `getLikelihoods` | Source code |
| `getPosteriors` | Source code |
| `plotPriors` | Source code |
| `topCounts` | Source code |
| allModels | Man page Source code |
| baySeq | Man page |
| baySeq-class | Man page |
| baySeq-classes | Man page |
| baySeq-package | Man page |
| bbDensity | Man page |
| bbNCDist | Man page |
| bimodalSeparator | Man page Source code |
| c,countData-method | Man page |
| countData | Man page |
| countData-class | Man page |
| densityFunction | Man page |
| densityFunction,countData-method | Man page |
| densityFunction-class | Man page |
| densityFunction<- | Man page |
| densityFunction<-,countData-method | Man page |
| densityFunctions | Man page Source code |
| dim,countData-method | Man page |
| flatten | Man page |
| flatten,countData-method | Man page |
| getLibsizes | Man page |
| getLikelihoods | Man page |
| getLikelihoods.BB | Man page |
| getLikelihoods.NB | Man page |
| getPosteriors | Man page |
| getPriors | Man page |
| getPriors.NB | Man page |
| getTPs | Man page Source code |
| groups | Man page |
| groups,countData-method | Man page |
| groups<- | Man page |
| groups<-,countData-method | Man page |
| libsizes | Man page |
| libsizes,countData-method | Man page |
| libsizes<- | Man page |
| libsizes<-,countData-method | Man page |
| makeOrderings | Man page Source code |
| marginaliseEqual | Man page Source code |
| marginalisePairwise | Man page |
| md2Density | Man page |
| md3Density | Man page |
| mdDensity | Man page |
| methObservables | Man page Source code |
| mobAnnotation | Man page |
| mobData | Man page |
| nbinomDensity | Man page |
| normDensity | Man page |
| pairData | Man page |
| plotMA.CD | Man page Source code |
| plotNullPrior | Man page Source code |
| plotPosteriors | Man page Source code |
| plotPriors | Man page |
| rbind | Man page |
| rbind,countData-method | Man page |
| replicates | Man page |
| replicates,countData-method | Man page |
| replicates<- | Man page |
| replicates<-,countData-method | Man page |
| seglens | Man page |
| seglens,countData-method | Man page |
| seglens<- | Man page |
| seglens<-,countData-method | Man page |
| selectTop | Man page Source code |
| show,countData-method | Man page |
| simData | Man page |
| summarisePosteriors | Man page Source code |
| topCounts | Man page |
| zimData | Man page |
