samplebioassay: Sample activity data for use with bioassayR

In bioassayR: Cross-target analysis of small molecule bioactivity

Description

This is sample bioactivity data, taken from assay identifier (aid) 1000 in the NCBI PubChem Bioassay database. These data are provided for testing the bioassayR library.

Usage

data(samplebioassay)

Format

A data frame with activity scores for 4 distinct compounds.

cid

unique compound identifer

activity

1=active, 0=inactive, NA=other

score

activity scores

Source

http://pubchem.ncbi.nlm.nih.gov NCBI PubChem

References

http://pubchem.ncbi.nlm.nih.gov NCBI Pubchem

Examples

## create a new bioassay object from these sample data 
data(samplebioassay)
myassay <- new("bioassay",aid="1000", source_id="PubChem BioAssay", targets="116516899", 
    target_types="protein", scores=samplebioassay)
myassay

bioassayR documentation built on March 1, 2021, 2 a.m.