Files in bioassayR

Cross-target analysis of small molecule bioactivity

README.md

NAMESPACE

DESCRIPTION

R/AllGenerics.R R/bioassay-accessors.R R/AllClasses.R R/loadingData.R R/similarity.R R/bioassaySet-accessors.R R/queries.R R/bayesian-cross-reactivity.R R/BioassayDB-accessors.R

inst/NEWS.Rd

inst/CITATION

inst/doc/bioassayR.html

inst/doc/bioassayR.Rmd inst/doc/bioassayR.R

inst/extdata/exampleAssay.xml

inst/extdata/sampleDatabase.sqlite

inst/extdata/exampleScores.csv

build/vignette.rds

tests/testthat.R tests/testthat/test_trinarySimilarity.R tests/testthat/test_perTargetMatrix.R tests/testthat/test_bioactivityFingerprint.R tests/testthat/test_targetSelectivity.R tests/testthat/test_crossReactivityProbability.R tests/testthat/test_scaleBioassaySet.R

vignettes/getids.RData

vignettes/header.html

vignettes/getBM.RData

vignettes/html.template_bootstrap

vignettes/bioassayR.Rmd

vignettes/Makefile_bootstrap

vignettes/Makefile

vignettes/bibtex.bib

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data/samplebioassay.rda

man/allCids.Rd man/screenedAtLeast.Rd man/loadIdMapping.Rd man/disconnectBioassayDB.Rd man/connectBioassayDB.Rd man/targetSelectivity.Rd man/loadBioassay.Rd man/translateTargetId.Rd man/parsePubChemBioassay.Rd man/dropBioassay.Rd man/trinarySimilarity.Rd man/perTargetMatrix.Rd man/bioactivityFingerprint.Rd man/selectiveAgainst.Rd man/samplebioassay.Rd man/newBioassayDB.Rd man/inactiveTargets.Rd man/dropBioassayIndex.Rd man/scaleBioassaySet.Rd man/allTargets.Rd man/addBioassayIndex.Rd man/addDataSource.Rd man/assaySetTargets.Rd man/getAssays.Rd man/getBioassaySetByCids.Rd man/bioassaySet-class.Rd man/getAssay.Rd man/activeAgainst.Rd man/BioAssayDB-class.Rd man/bioassay-class.Rd man/activeTargets.Rd man/queryBioassayDB.Rd man/crossReactivityProbability.Rd

bioassayR documentation built on March 1, 2021, 2 a.m.