pso: Psoriasis RNA-seq dataset

In calm: Covariate Assisted Large-scale Multiple testing

Description

A dataset containing the test statistics to analyze an RNA-seq study of psoriasis.

Usage

pso

Format

A dataset with the following vectors:

zval

16490 z-values of genes with matching microarray data

len_gene

16490 gene coding region length for zval

tval_mic

16490 matching microarray t-statistics

Source

Liang (2019), Empirical Bayes analysis of RNA sequencing experiments with auxiliary information, to appear in Annals of Applied Statistics;

Examples

data(pso)
dim(pso)
# total number of genes without matching microarray data
sum(is.na(pso$tval_mic))

Example output

[1] 18151     3
[1] 1658

calm documentation built on Nov. 8, 2020, 5:33 p.m.