cancerclass: Development and validation of diagnostic tests from high-dimensional molecular data

The classification protocol starts with a feature selection step and continues with nearest-centroid classification. The accurarcy of the predictor can be evaluated using training and test set validation, leave-one-out cross-validation or in a multiple random validation protocol. Methods for calculation and visualization of continuous prediction scores allow to balance sensitivity and specificity and define a cutoff value according to clinical requirements.

AuthorJan Budczies, Daniel Kosztyla
Date of publicationNone
MaintainerDaniel Kosztyla <danielkossi@hotmail.com>
LicenseGPL 3
Version1.18.0

View on Bioconductor

Files in this package

cancerclass/DESCRIPTION
cancerclass/NAMESPACE
cancerclass/R
cancerclass/R/cancerclass-internal.R cancerclass/R/fit.R
cancerclass/R/loo.R
cancerclass/R/nvalidate.R cancerclass/R/nvalidation-class.R cancerclass/R/plot3d_nvalidation.R cancerclass/R/plot3d_validation.R cancerclass/R/plot_nvalidation.R cancerclass/R/plot_prediction.R cancerclass/R/plot_predictor.R cancerclass/R/plot_validation.R cancerclass/R/predict_predictor.R cancerclass/R/prediction-class.R cancerclass/R/predictor-class.R cancerclass/R/summary_prediction.R cancerclass/R/validate.R cancerclass/R/validation-class.R
cancerclass/build
cancerclass/build/vignette.rds
cancerclass/data
cancerclass/data/GOLUB.RData
cancerclass/data/GOLUB1.RData
cancerclass/data/datalist
cancerclass/inst
cancerclass/inst/doc
cancerclass/inst/doc/vignette_cancerclass.R
cancerclass/inst/doc/vignette_cancerclass.Rnw
cancerclass/inst/doc/vignette_cancerclass.pdf
cancerclass/man
cancerclass/man/GOLUB.Rd cancerclass/man/cancerclass-internal.Rd cancerclass/man/cancerclass-package.Rd cancerclass/man/fit.Rd cancerclass/man/loo.Rd cancerclass/man/nvalidate.Rd cancerclass/man/nvalidation-class.Rd cancerclass/man/plot.Rd cancerclass/man/plot3d.Rd cancerclass/man/predict,predictor-method.Rd cancerclass/man/prediction-class.Rd cancerclass/man/predictor-class.Rd cancerclass/man/summary,prediction-method.Rd cancerclass/man/validate.Rd cancerclass/man/validation-class.Rd
cancerclass/src
cancerclass/src/copa.c
cancerclass/src/copa.h
cancerclass/src/cor.c
cancerclass/src/cor.h
cancerclass/src/fc.c
cancerclass/src/fc.h
cancerclass/src/help.c
cancerclass/src/help.h
cancerclass/src/ort.c
cancerclass/src/ort.h
cancerclass/src/os.c
cancerclass/src/os.h
cancerclass/src/shift.c
cancerclass/src/shift.h
cancerclass/src/statistics.c
cancerclass/src/student.c
cancerclass/src/student.h
cancerclass/src/throw.c
cancerclass/src/throw.h
cancerclass/src/welch.c
cancerclass/src/welch.h
cancerclass/src/wilcox.c
cancerclass/src/wilcox.h
cancerclass/vignettes
cancerclass/vignettes/vignette_cancerclass.Rnw

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