cancerclass-internal: Internal Functions in the cancerclass Package

In cancerclass: Development and validation of diagnostic tests from high-dimensional molecular data

Description

Internal functions in the cancerclass package, which are only user-visible because of the special nature of the cancerclass name space.

Usage

get.d(X, y, method="cor")
get.d2(X, x1, x2, method="cor") 
ilogit(x)
calc.roc(x, y, ci="wilson")
calc.auc(S)
get.prop(n, m, ci="exact", conf.level=.9)
get.ntrain(n1, n2, percent, n.min=5)
prepare(eset, class="class")
get.lm(v, ngenes=10, dist="cor")
filter(method)
 


#.First.lib(lib, pkg)
.onLoad(lib, pkg)
.initFoo(where)
#ratio(x,c1,c2)

Arguments

X	A numeric data matrix or data frame
method	A numeric data matrix or data frame
x	Numerical or character vector describing class membership
y	Fixed number of features

Details

Internal function are used for auxiliary calculation.

Value

Each internal function represents function specific results.

Author(s)

Cancerclass Team

cancerclass documentation built on Nov. 8, 2020, 5:31 p.m.