featureModuleTable: Output a feature module table

In celda: CEllular Latent Dirichlet Allocation

Description

Creates a table that contains the list of features in each feature module.

Usage

featureModuleTable(
  sce,
  useAssay = "counts",
  altExpName = "featureSubset",
  outputFile = NULL
)

Arguments

sce	A SingleCellExperiment object returned by celda_G, or celda_CG, with the matrix located in the useAssay assay slot. Rows represent features and columns represent cells.
useAssay	A string specifying which assay slot to use. Default "counts".
altExpName	The name for the altExp slot to use. Default "featureSubset".
outputFile	File name for feature module table. If NULL, file will not be created. Default NULL.

Value

Matrix. Contains a list of features per each column (feature module)

Examples

data(sceCeldaCG)
featureModuleTable(sceCeldaCG)

celda documentation built on Nov. 8, 2020, 8:24 p.m.