Man pages for cellTree
Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure
| cell.ordering.table | Ranking of cells according to backbone tree structure |
| cellTree-package | Inference and visualisation of Single-Cell RNA-seq Data data... |
| compute.backbone.tree | Backbone Tree construction |
| compute.go.enrichment | Gene Ontology enrichment analysis |
| compute.lda | LDA model inference |
| ct.plot.go.dag | Gene Ontology enrichment sets plotting |
| ct.plot.grouping | Plot cell tree with grouping information |
| ct.plot.heatmap | Gene Expression Heatmap |
| ct.plot.topics | Plot cell tree with topic distributions |
| get.cell.dists | Cell Pairwise-Distance Matrix |
| go.results.to.latex | LaTeX output for Gene Ontology Enrichment results |
| HSMM_lda_model | Pre-computed LDA model for HSMMSingleCell data |
