API for chipenrich
Gene Set Enrichment For ChIP-seq Peak Data
| Global functions | |
|---|---|
| ..plot_chipenrich_spline | Source code |
| ..plot_dist_to_tss | Source code |
| ..plot_gene_coverage | Source code |
| ..plot_polyenrich_spline | Source code |
| assign_peak_segments | Man page Source code |
| assign_peaks | Man page Source code |
| avg_binned_coverage | Source code |
| avg_binned_numpeaks | Source code |
| avg_binned_peak | Source code |
| broadenrich | Man page Source code |
| calc_approx_weights | Source code |
| calc_genes_peak_weight | Source code |
| calc_peak_gene_overlap | Man page Source code |
| calc_peak_weights | Source code |
| calc_weights_chipenrich | Source code |
| calc_weights_polyenrich | Source code |
| chipenrich | Man page Source code |
| chipenrich_package | Man page |
| chipenrich_package-package | Man page |
| filter_genesets | Man page Source code |
| genome_to_organism | Man page Source code |
| genome_to_orgdb | Man page Source code |
| get_test_method | Man page Source code |
| glm.scoretest | Source code |
| hybrid.join | Source code |
| hybridenrich | Man page Source code |
| hybridenrich.old | Source code |
| load_peaks | Man page Source code |
| num_peaks_per_gene | Man page Source code |
| peak_nearest_tss | Source code |
| peaks2genes | Man page Source code |
| plot_chipenrich_spline | Man page Source code |
| plot_dist_to_tss | Man page Source code |
| plot_gene_coverage | Man page Source code |
| plot_polyenrich_spline | Man page Source code |
| polyenrich | Man page Source code |
| post_process_enrichments | Man page Source code |
| postprocess_peak_grs | Man page Source code |
| proxReg | Man page Source code |
| randomize_ldef_bylength | Source code |
| randomize_ldef_bylocation | Source code |
| randomize_ldef_complete | Source code |
| randomize_ppg_all | Source code |
| randomize_ppg_length | Source code |
| read_bed | Man page Source code |
| read_geneset | Man page Source code |
| read_ldef | Man page Source code |
| read_mappa | Man page Source code |
| recode_peaks | Man page Source code |
| reset_ncores_for_windows | Man page Source code |
| setup_genesets | Man page Source code |
| setup_locusdef | Man page Source code |
| setup_mappa | Man page Source code |
| single_approx | Source code |
| single_broadenrich | Source code |
| single_chipapprox | Source code |
| single_chipenrich | Source code |
| single_chipenrich_slow | Source code |
| single_polyapprox | Source code |
| single_polyenrich | Source code |
| single_polyenrich_slow | Source code |
| single_polyenrich_weighted | Source code |
| single_proxReg | Source code |
| supported_genesets | Man page Source code |
| supported_genomes | Man page Source code |
| supported_locusdefs | Man page Source code |
| supported_methods | Man page Source code |
| supported_read_lengths | Man page Source code |
| test_approx | Source code |
| test_binomial | Source code |
| test_broadenrich | Source code |
| test_broadenrich_splineless | Source code |
| test_chipapprox | Source code |
| test_chipenrich | Source code |
| test_chipenrich_slow | Source code |
| test_fisher_exact | Source code |
| test_polyapprox | Source code |
| test_polyenrich | Source code |
| test_polyenrich_slow | Source code |
| test_polyenrich_weighted | Source code |
| test_proxReg | Source code |
