chipenrich_package: chipenrich: Gene Set Enrichment For ChIP-seq Peak Data and...
In chipenrich: Gene Set Enrichment For ChIP-seq Peak Data
Description
The chipenrich package includes three classes of methods that adjust for potential confounders of gene set enrichment testing (locus length and mappability of the sequence reads). The first, chipenrich, is designed for use with transcription-factor (TF) based ChIP-seq experiments and other DNA sequencing experiments with narrow genomic regions. The second, polyenrich, is similarly designed for TF based ChIP-seq, but where the number of peaks present in gene loci may be important. The third, broadenrich, is designed for use with histone modification based ChIP-seq experiments and other DNA sequencing experiments with broad genomic regions.
chipenrich documentation built on Nov. 8, 2020, 8:11 p.m.
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Description
The chipenrich package includes three classes of methods that adjust for potential confounders of gene set enrichment testing (locus length and mappability of the sequence reads). The first, chipenrich, is designed for use with transcription-factor (TF) based ChIP-seq experiments and other DNA sequencing experiments with narrow genomic regions. The second, polyenrich, is similarly designed for TF based ChIP-seq, but where the number of peaks present in gene loci may be important. The third, broadenrich, is designed for use with histone modification based ChIP-seq experiments and other DNA sequencing experiments with broad genomic regions.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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