filter_genesets: Function to filter genesets by locus definition and size
In chipenrich: Gene Set Enrichment For ChIP-seq Peak Data
Description
Usage
Arguments
Value
Description
This function filters gene sets based on the genes that are present in a particular
locus definition. After determining which genes are present in both the GeneSet,
gs_obj, and the LocusDefinition ldef_obj, gene sets are filtered
by size with min_geneset_size and max_geneset_size.
Usage
1
2
filter_genesets(gs_obj, ldef_obj, min_geneset_size = 15,
max_geneset_size = 2000)
Arguments
gs_obj
A valid GeneSet object
ldef_obj
A valid LocusDefinition object
min_geneset_size
An integer indicating the floor for genes in a geneset. Default 15.
max_geneset_size
An integer indicating the ceiling for genes in a geneset. Default 2000.
Value
An altered gs_obj with changed set.gene and all.genes
slots reflecting min_geneset_size and max_geneset_size after intersecting
with the genes present in the particular locus definition.
chipenrich documentation built on Nov. 8, 2020, 8:11 p.m.
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Description Usage Arguments Value
Description
This function filters gene sets based on the genes that are present in a particular
locus definition. After determining which genes are present in both the GeneSet,
gs_obj, and the LocusDefinition ldef_obj, gene sets are filtered
by size with min_geneset_size and max_geneset_size.
Usage
1 2 | filter_genesets(gs_obj, ldef_obj, min_geneset_size = 15,
max_geneset_size = 2000)
|
Arguments
gs_obj |
A valid GeneSet object |
ldef_obj |
A valid LocusDefinition object |
min_geneset_size |
An integer indicating the floor for genes in a geneset. Default 15. |
max_geneset_size |
An integer indicating the ceiling for genes in a geneset. Default 2000. |
Value
An altered gs_obj with changed set.gene and all.genes
slots reflecting min_geneset_size and max_geneset_size after intersecting
with the genes present in the particular locus definition.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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