ibsDist: Distance matrix based on identity by state (IBS)
In chopsticks: The 'snp.matrix' and 'X.snp.matrix' Classes
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Expresses a matrix of IBS counts (see ibsCount) as a
distance matrix. The distance between two samples is returned as the
proportion of allele comparisons which are not IBS.
Usage
1
ibsDist(counts)
Arguments
counts
A matrix of IBS counts as produced by the function
ibsCount
Value
An object of class "dist" (see dist)
Author(s)
David Clayton david.clayton@cimr.cam.ac.uk
See Also
Examples
1
2
3
data(testdata)
ibs <- ibsCount(Xchromosome)
distance <- ibsDist(ibs)
chopsticks documentation built on Nov. 8, 2020, 7:51 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Expresses a matrix of IBS counts (see ibsCount) as a
distance matrix. The distance between two samples is returned as the
proportion of allele comparisons which are not IBS.
Usage
1 | ibsDist(counts)
|
Arguments
counts |
A matrix of IBS counts as produced by the function
|
Value
An object of class "dist" (see dist)
Author(s)
David Clayton david.clayton@cimr.cam.ac.uk
See Also
Examples
1 2 3 | data(testdata)
ibs <- ibsCount(Xchromosome)
distance <- ibsDist(ibs)
|
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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