wtccc.sample.list: read the sample list from the header of the WTCCC signal file...
In chopsticks: The 'snp.matrix' and 'X.snp.matrix' Classes
Description
Usage
Arguments
Details
Value
Author(s)
References
See Also
View source: R/wtccc.sample.list.R
Description
This is a convenience function for constructing the sample list from
the header of a WTCCC signal file.
Usage
1
wtccc.sample.list(infile)
Arguments
infile
One of the signal files in a set of 23 (it is advisable
to use the smaller ones such as number 22, although it shouldn't matter).
Details
The header of a WTCCC signal file is like this:
1
AFFYID RSID pos AlleleA AlleleB 12999A2_A 12999A2_B ...
The first 5 fields are discarded. There after, every other token
is retained, with the "\_A" or "\_B" part removed to give the sample list.
See also read.wtccc.signals for more details.
Value
The value returned is a character vector contain the sample names
or the plate-well names as appropriate.
Author(s)
Hin-Tak Leung htl10@users.sourceforge.net
References
See Also
chopsticks documentation built on Nov. 8, 2020, 7:51 p.m.
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Description Usage Arguments Details Value Author(s) References See Also
View source: R/wtccc.sample.list.R
Description
This is a convenience function for constructing the sample list from the header of a WTCCC signal file.
Usage
1 | wtccc.sample.list(infile)
|
Arguments
infile |
One of the signal files in a set of 23 (it is advisable to use the smaller ones such as number 22, although it shouldn't matter). |
Details
The header of a WTCCC signal file is like this:
1 | AFFYID RSID pos AlleleA AlleleB 12999A2_A 12999A2_B ...
|
The first 5 fields are discarded. There after, every other token is retained, with the "\_A" or "\_B" part removed to give the sample list.
See also read.wtccc.signals for more details.
Value
The value returned is a character vector contain the sample names or the plate-well names as appropriate.
Author(s)
Hin-Tak Leung htl10@users.sourceforge.net
References
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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