read.pedfile.map: function to read the accompanying map file of a LINKAGE ped...

Description Usage Arguments Details Value Note Author(s) References See Also

View source: R/read.snps.pedfile.R

Description

This function read the accompanying map file of a LINKAGE ped file, for the SNP names, position and chromosome.

Usage

1

Arguments

file

A Plink map file

Details

One such map file is the one accompanying the sample ped file of Haploview.

Value

A data frame with columns "snp.names", "position", "chromosome".

Note

This is used internally by read.snps.pedfile to read an accompanying map file.

Author(s)

Hin-Tak Leung htl10@users.sourceforge.net

References

See the documentation and description of ped files in Haploview (http://www.broad.mit.edu/mpg/haploview/)

See Also

read.snps.pedfile


chopsticks documentation built on Nov. 8, 2020, 7:51 p.m.