Files in chroGPS
chroGPS2: Generation, visualization and differential analysis of epigenome maps
DESCRIPTION
NAMESPACE
inst/NEWS
inst/CITATION
inst/doc/chroGPS.Rnw
inst/doc/NEWS
inst/doc/chroGPS.R
inst/doc/references.bib
inst/doc/chroGPS.pdf
vignettes/mds-2d-3d.png
vignettes/chroGPS.Rnw
vignettes/diffGenes.png
vignettes/mds3d_1.png
vignettes/DomainTestFly2.pdf
vignettes/references.bib
vignettes/chroGPS-plotly.png
vignettes/diffFactors2.pdf
vignettes/diffFactors1.pdf
vignettes/DomainTestFly1.pdf
vignettes/chroGPS-cyto.png
vignettes/chroGPS-cyto3d.png
R/profileClusters.R
R/diffGenes.R
R/procrustesAdj.R
R/clusGPS.R
R/getmodEncode.R
R/gff2RDList.R
R/mds-class.R
R/diffFactors.R
R/mergeReplicates.R
R/mds.R
R/rankFactorsbyProfile.R
R/distGPS.R
R/domainDist.R
R/gps2xgmml.R
R/geneSetGPS.R
R/adjustPeaks.R
R/rankFactorsbyDomain.R
man/mds.Rd
man/splitDistGPS-class.Rd
man/procrustesAdj.Rd
man/geneSetGPS.Rd
man/s2.Rd
man/gff2RDList.Rd
man/bg3.Rd
man/combineGenesMatrix.Rd
man/adjustPeaks.Rd
man/boostMDS.Rd
man/diffGenes.Rd
man/diffFactors.Rd
man/clusGPS-class.Rd
man/profileClusters.Rd
man/mergeReplicates.Rd
man/mergeClusters.Rd
man/addVar.Rd
man/rankFactorsbyDomain.Rd
man/domainDist.Rd
man/gps2xgmml.Rd
man/distGPS-class.Rd
man/rankFactorsbyProfile.Rd
man/mds-class.Rd
man/distGPS.Rd
man/getURL.Rd
man/clusGPS.Rd
build/vignette.rds
data/s2Seq.RData
data/toydists.RData
data/bg3.RData
data/datalist
data/repliSeq.RData
data/s2.RData
