bg3: Sample binding site and related data from BG3 cell line in...

In chroGPS: chroGPS2: Generation, visualization and differential analysis of epigenome maps

Description

chroGPS example dataset including ChIP-CHIP (modEncode) and ChIP-Seq (NCBI GEO GSE19325) data for Drosophila melanogaster BG3 cell line. The object toydists stores precomputed distGPS objects (called d, d2, d3) for the epigenetic factors used in the dynamic vignette that comes with the package.

Usage

data(bg3)

Source

http://www.modencode.org http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19325

References

http://www.modencode.org http://www.ncbi.nlm.nih.gov/geo/

See Also

s2 for the analog S2 cell line object. toydists for precomputed distance matrixes.

Examples

data(bg3)
class(bg3)
bg3
bg3names$Factor
# See vignette examples for several uses of these datasets.

chroGPS documentation built on Oct. 31, 2019, 4:52 a.m.