Man pages for chroGPS
chroGPS: visualizing the epigenome

addVarPlot vector of a quantitative variable over a MDS map.
adjustPeaksAdjust peak width so that samples obtained under different...
boostMDSImprove goodness-of-fit of a given MDS solution in terms of...
clusGPSComputation of cluster density estimates for cluster contour...
clusGPS-classClass '"clusGPS"'
distGPSCompute matrix with pairwise distances between objects....
distGPS-classClass '"distGPS"'
domainDistOverview of intra and inter-domain distances.
geneSetGPSHighlight point (gene) position over a Multi-dimensional...
getURLRetrieve file from URL.
gff2RDListRetrieve binding site information from GFF3 files.
gps2xgmmlExport an 'mds' object to Cytoscape .xgmml format
mdsMetric and non-metric Multidimensional Scaling for a distGPS...
mds-classClass '"mds"'
mergeClustersUnsupervised cluster merging based on their observed overlap...
procrustesAdjUse Procrustes to adjust an MDS map containing samples...
profileClustersCompute enrichment/depletion ratio for the observed...
s2Sample binding site and related data from S2 and BG3 cell...
splitDistGPS-classClass '"splitDistGPS"'
chroGPS documentation built on Nov. 17, 2017, 10:12 a.m.