Description Usage Arguments Value Author(s) References See Also Examples
View source: R/BiofeatureGraphics.R
Create one track of the genomic positions of variants from the ClinVar database (CNV only, Variants excluded) using the Gviz bioconductor package
1 | ClinVarCnv_UCSC(gen, chr, start, end, title="ClinVar Variants", showId = FALSE)
|
gen |
the name of the genome |
chr |
the chromosome of interest |
start |
the first position in region of interest (the smallest value) |
end |
the last position in region of interest (the biggest value) |
title |
The name of the annotation track |
showId |
Show the ID of the genetic elements |
An UcscTrack object of Gviz
Tiphaine Martin
http://genome-euro.ucsc.edu/cgi-bin/hgTrackUi?hgsid=202839739_2hYQ1BAOuBMAR620GjrtdrFAy6dn&c=chr6&g=clinvar
http://bioconductor.org/packages/release/bioc/html/Gviz.html
snpLocations_UCSC
, structureBiomart_ENSEMBL
,
snpBiomart_ENSEMBL
,
CoreillCNV_UCSC
, COSMIC_UCSC
,
ClinVarMain_UCSC
1 2 3 4 5 6 7 8 9 10 11 12 |
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