compare_signatures-HierarchicalPartition-method: Compare Signatures from Different Nodes

In cola: A Framework for Consensus Partitioning

Description

Compare Signatures from Different Nodes

Usage

## S4 method for signature 'HierarchicalPartition'
compare_signatures(object, depth = max_depth(object),
    method = c("euler", "upset"), verbose = interactive(), ...)

Arguments

object	A HierarchicalPartition-class object.
depth	Depth of the hierarchy.
method	Method to visualize.
verbose	Whether to print message.
...	Other arguments passed to get_signatures,HierarchicalPartition-method.

Details

It plots an Euler diagram or a UpSet plot showing the overlap of signatures from different nodes. On each node, the number of subgroups is inferred by suggest_best_k,ConsensusPartition-method.

Examples

data(golub_cola_rh)
compare_signatures(golub_cola_rh)

cola documentation built on Nov. 8, 2020, 8:12 p.m.