get_classes-DownSamplingConsensusPartition-method: Get subgroup labels

In cola: A Framework for Consensus Partitioning

Description

Get subgroup labels

Usage

## S4 method for signature 'DownSamplingConsensusPartition'
get_classes(object, k = object@k, p_cutoff = 0.05, reduce = FALSE)

Arguments

object	A DownSamplingConsensusPartition-class object.
k	Number of subgroups.
p_cutoff	Cutoff of p-values of class label prediction. It is only used when k is a vector.
reduce	Used internally.

Value

If k is a scalar, it returns a data frame with two columns:

• the class labels

• the p-value for the prediction of class labels.

If k is a vector, it returns a data frame of class labels for each k. The class label with prediction p-value > p_cutoff is set to NA.

Examples

data(golub_cola_ds)
get_classes(golub_cola_ds, k = 3)
get_classes(golub_cola_ds)

cola documentation built on Nov. 8, 2020, 8:12 p.m.